PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03357.1.g00080.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 301aa    MW: 33321.9 Da    PI: 9.2001
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03357.1.g00080.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.82e-34581492102
                                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEE CS
                    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiwe 80 
                                     Fl+k+y++++d++++++isws  g sfv++d++ f++++Lp++Fkh++f+SF+RQLn+YgF+kv+ ++         we
  Zmw_sc03357.1.g00080.1.sm.mkhc  58 FLTKVYDMVSDPATDSIISWSPGGGSFVIWDSHAFERDLLPRHFKHNHFTSFIRQLNTYGFHKVDPDR---------WE 127
                                     9****************************************************************999.........** PP

                                     EEESXXXXXXXXXXXXXXXXXX CS
                    HSF_DNA-bind  81 FkhksFkkgkkellekikrkks 102
                                     ++++ F k++k+ll++ikrkk+
  Zmw_sc03357.1.g00080.1.sm.mkhc 128 WANEGFVKDQKHLLKTIKRKKK 149
                                     ********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.6E-5654147IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.92E-3554147IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.9E-3755147IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.4E-3158147IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.0E-195881IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.0E-1996108IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.0E-19109121IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MGSKKKSPQP SAAAEGTPAA AGEAPGDVGA LPAGKGPAPA PAPAPAVVVP KPPDVAPFLT  60
KVYDMVSDPA TDSIISWSPG GGSFVIWDSH AFERDLLPRH FKHNHFTSFI RQLNTYGFHK  120
VDPDRWEWAN EGFVKDQKHL LKTIKRKKKI SQETPDPPQA PVKPAPGTET IEIGNYGGLE  180
KEVEKLKRDK TLLMQQLVDL RHYQQSSNLE LQNLIQRLHV MEQNQQQMMA LLAIVVQNPD  240
FLNQLVQQQR RSNLWNDDGS KKRRFIALEQ GPAAEQETSG ASAPIIQYRP PVPAIANEYL  300
V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-255214723129Heat shock factor protein 1
5d5v_B1e-255214723129Heat shock factor protein 1
5d5v_D1e-255214723129Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002468244.11e-163hypothetical protein SORBIDRAFT_01g042370
RefseqXP_004985150.11e-163PREDICTED: heat stress transcription factor A-9-like
SwissprotQ10PR41e-140HSFA9_ORYSJ; Heat stress transcription factor A-9
TrEMBLC5WSM11e-163C5WSM1_SORBI; Putative uncharacterized protein Sb01g042370
TrEMBLK4AAD31e-163K4AAD3_SETIT; Uncharacterized protein
TrEMBLK4ACW01e-164K4ACW0_SETIT; Uncharacterized protein
STRINGSi035840m1e-163(Setaria italica)
STRINGSb01g042370.11e-163(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114943039